rs227591115 SNP Detail

Summary

• ID
  rs227591115
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTGGGG TGGCCCTGGG
  GACACTTCCA GGCCAGCTAT CCCCTGCACC CCACCAGCTG ATTTCGAGCG TGGCAGAGGG
  AAGGAAAGGG GCGAGTGGGC TGGGCAATGG CCCCAACAGG AAACGGGGAC TTAGGAGAAC
  ACGCTGGAGA TATGTGTGGC CGCCAAATGT CACCATCTCT CCTCAGTGGC TCCCCAGAGC
  W
  GGTGCTTTTA AGAACCCTGT TTCCTCTCAG AGCCCAGGGA GAGTCCAAGG ACATGGCGCA
  TCTGGAAGTG GGACTGCAGG AGTTCTCTGG TGGCCTCGTG CTGTCCCTCT GGCCACTTCT
  CATGGTGGGG TGGTCAGCGG CAGCTCGCCA TGGCAGTGCC CATTGGTACA CACTAACCTC
  GGTGGAAAAA TAACCATTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436746	MGP_WTSI_18_82754286	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	A	A	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227591115					SNP	A	A	A	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	A	A	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436746	MGP_WTSI_18_82754286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603019 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	1566 bp proximal
Gm58829	predicted gene, 58829	within coordinates
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	759 bp distal
Tssr152152	transcription start site region 152152	769 bp downstream
Tssr152153	transcription start site region 152153	645 bp downstream
Tssr152154	transcription start site region 152154	622 bp downstream
Tssr152155	transcription start site region 152155	586 bp downstream
Tssr152156	transcription start site region 152156	517 bp downstream
Tssr152157	transcription start site region 152157	439 bp downstream
Tssr152158	transcription start site region 152158	402 bp downstream
Tssr152159	transcription start site region 152159	378 bp downstream
Tssr152160	transcription start site region 152160	332 bp downstream
Tssr152161	transcription start site region 152161	316 bp downstream
Tssr152162	transcription start site region 152162	295 bp downstream
Tssr152163	transcription start site region 152163	278 bp downstream
Tssr152164	transcription start site region 152164	233 bp downstream
Tssr152165	transcription start site region 152165	160 bp downstream
Tssr152166	transcription start site region 152166	124 bp downstream
Tssr152167	transcription start site region 152167	92 bp downstream
Tssr152168	transcription start site region 152168	63 bp downstream
Tssr152169	transcription start site region 152169	10 bp downstream
Tssr152170	transcription start site region 152170	64 bp upstream
Tssr152171	transcription start site region 152171	124 bp upstream
Tssr152172	transcription start site region 152172	231 bp upstream
Tssr152173	transcription start site region 152173	254 bp upstream
Tssr152174	transcription start site region 152174	272 bp upstream
Tssr152175	transcription start site region 152175	295 bp upstream
Tssr152176	transcription start site region 152176	504 bp upstream
Tssr152177	transcription start site region 152177	672 bp upstream
Tssr154083	transcription start site region 154083	664 bp upstream
Tssr154084	transcription start site region 154084	610 bp upstream
Tssr154085	transcription start site region 154085	353 bp upstream
Tssr154086	transcription start site region 154086	174 bp downstream
Tssr154087	transcription start site region 154087	389 bp downstream
Tssr154088	transcription start site region 154088	429 bp downstream
Tssr154089	transcription start site region 154089	540 bp downstream
Tssr154090	transcription start site region 154090	612 bp downstream