rs227592297 SNP Detail

Summary

• ID
  rs227592297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84569969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCTTTC TCTTCTCAGT
  TTTCACGACT AATTTGACTC TTTTAATTGG ATTGTCAAGG ACAATTGACT TAACCTGTCT
  CTGAGCACAG GCCTTAAGTC TTTTTTTTTT TTTTTTTTTT TTTTTGCCTT AAGTCTTAAG
  TTAGATGACA CCCTTACTCC CTTACTGTTT GTGAGTTTGG GCTACCAGCT CCATTTTTGC
  Y
  TTTTTTTTTT TTTTTTTTTT TAACTTTGCT TTTCTTGCCC TCAGGGGTCT TCTGTCCCCT
  CCCCTTCCCC ATGAGGGCCA AAGCTTTCAT CACTGTTGCC CAGGCAACAG TGGGGATGCC
  TCATTCCTCA CAGCTCTGCA TATCTAAGTA TATCTTAAGC CTTTGTCCGC AAGGCTGGCT
  CAATTCTTTG TAAGTGGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss397140829	MGP_WTSI_16_84773326	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227592297					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397140829	MGP_WTSI_16_84773326	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84569969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	845 bp proximal
Jam2	junction adhesion molecule 2	1042 bp upstream
Rr518531	regulatory region 518531	449 bp distal
Rr518532	regulatory region 518532	409 bp distal
Rr518533	regulatory region 518533	552 bp proximal
Rr518534	regulatory region 518534	1316 bp proximal
Tssr139177	transcription start site region 139177	73 bp downstream
Tssr139178	transcription start site region 139178	571 bp upstream
Tssr139179	transcription start site region 139179	774 bp upstream
Tssr139180	transcription start site region 139180	809 bp upstream
Tssr139181	transcription start site region 139181	1005 bp upstream
Tssr139182	transcription start site region 139182	1055 bp upstream
Tssr139183	transcription start site region 139183	1082 bp upstream
Tssr139184	transcription start site region 139184	1094 bp upstream
Tssr139185	transcription start site region 139185	1148 bp upstream
Tssr139186	transcription start site region 139186	1182 bp upstream
Tssr139187	transcription start site region 139187	1220 bp upstream
Tssr139188	transcription start site region 139188	1240 bp upstream
Tssr139189	transcription start site region 139189	1280 bp upstream
Tssr139190	transcription start site region 139190	1347 bp upstream
Tssr141866	transcription start site region 141866	467 bp upstream