rs227595234 SNP Detail

Summary

• ID
  rs227595234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15538603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaactggcc cagcagttgg aggtcatcat
  gcttagagtg catagagagg acccagcacc ggtcaggtag ctcaaaacca cctagtccca
  gggcaatcag atgccctctt cttccctggc acctacatgc ctcaacacac gcactcgcgc
  R
  tgcgcGCGCG CGcacacaca cacacacaca cacacacaca cactcacaAA GTTGTCCCAT
  TAGTGGACTA ATTTAAAAGG ATAAATGAAC AAAGTGTTAA AATGAACTTA ACCTTCCTAA
  GAAGTATATG AACTGAGAAC gagaaggagg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322867609	CHEV_9_15431751	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227595234					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15538603 () rs orientation: forward

Symbol	Name	Function Class
4930540M03Rik	RIKEN cDNA 4930540M03 gene	within coordinates
Cpgi21372	CpG island 21372	414 bp proximal
Deup1	deuterosome assembly protein 1	within coordinates
Rr674358	regulatory region 674358	336 bp proximal
Rr674359	regulatory region 674359	586 bp proximal
Rr674360	regulatory region 674360	639 bp proximal
Tssr83870	transcription start site region 83870	618 bp upstream
Tssr88249	transcription start site region 88249	513 bp downstream
Tssr88250	transcription start site region 88250	533 bp downstream
Tssr88251	transcription start site region 88251	563 bp downstream
Tssr88252	transcription start site region 88252	590 bp downstream
Tssr88253	transcription start site region 88253	603 bp downstream
Tssr88254	transcription start site region 88254	976 bp downstream
Tssr88255	transcription start site region 88255	1019 bp downstream