rs227598029 SNP Detail

Summary

• ID
  rs227598029
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132798056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCATAATT TGCGGGGTGG
  TTGCGTGGCT CCGCCTGAGC GCTCCTCCTA GTCTGGAAGG ACTGAGTGAG GAGGGCGCCG
  AGGACGGTGG CCCGGGGGAC CGGGACCGTG GAATTGTCCA AGACCTTTGA CCGAGGGTTC
  CGGAGACCTC TGTACAGCTC CCGTTTTACA TCTCTGTTCT GGCCTCCTTG AGAAGGACTT
  W
  CCCCTATTCG AGGCCGCCCC CAGTGTGTTT TGATTCCATC AAAGAATTGG CATTTCGAAG
  TGTCTCTTGA CTCTCCTTAG CTTCTCTAGC GCTTGGGTTT GTTTTGGAAT TGGGGTTTTT
  ACATCCTGAG TTTCCAGACT TCCCCAAAGG CGAAGCACTA AATGGAAAGA AGAAGTTAAT
  TGGAAAGGAT TACAGAATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359780812	MGP_WTSI_3_132755259	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227598029					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359780812	MGP_WTSI_3_132755259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132798056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13847	CpG island 13847	within coordinates
Gstcd	glutathione S-transferase, C-terminal domain containing	262 bp upstream
Ints12	integrator complex subunit 12	Intron
Rr398028	regulatory region 398028	1100 bp downstream
Rr398029	regulatory region 398029	237 bp downstream
Rr398030	regulatory region 398030	731 bp upstream
Rr585500	regulatory region 585500	481 bp distal
Rr585501	regulatory region 585501	445 bp distal
Rr585502	regulatory region 585502	273 bp distal
Rr585503	regulatory region 585503	within coordinates
Rr585504	regulatory region 585504	598 bp proximal
Tssr31768	transcription start site region 31768	453 bp downstream
Tssr31769	transcription start site region 31769	422 bp downstream
Tssr31770	transcription start site region 31770	388 bp downstream
Tssr31771	transcription start site region 31771	342 bp downstream
Tssr31772	transcription start site region 31772	275 bp upstream
Tssr35744	transcription start site region 35744	533 bp upstream
Tssr35745	transcription start site region 35745	512 bp upstream
Tssr35746	transcription start site region 35746	448 bp upstream
Tssr35747	transcription start site region 35747	256 bp upstream
Tssr35748	transcription start site region 35748	241 bp upstream
Tssr35749	transcription start site region 35749	83 bp downstream