rs227602096 SNP Detail

Summary

• ID
  rs227602096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67231170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAATCAGAT TGTTATCCTA AAATTTGCAG
  TGTGCATCTA GCTTGATGCA TTTGTTGCAA AATTCTCACC TGGTATGACA TGCAGGGGTG
  CCTTTCAGAA CAGCTTCGGT GTAGCACATA CCTGCTAACA GCTGTTTGTC CCTATCTAAT
  R
  CACTGAGGCT TCTTTGAATG TAAACATTTT GGATTTTATC TCCCGTTGCT CACTCCTGAA
  ACATGCACAG AGTCACCAAG CGTGGAAGCA GGGATGACAC AACAGTGACC TACCTGCTCT
  GCAGTCCCTG GTCAGCTTCC TGAGCACATT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319762252	CHEV_1_67238585	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227602096					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67231170 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7226	transcription start site region 7226	1269 bp upstream
Tssr7227	transcription start site region 7227	1751 bp upstream
Tssr7228	transcription start site region 7228	1803 bp upstream