rs227603416 SNP Detail

Summary

• ID
  rs227603416
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94881121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACACAC AGATACCGTC
  ATGTGACACT CCATTCTCCT CTGAAGTCCA CCTAAGCTCA GAGAGGGAAG ATGGCAGGTC
  AGGCCCATAG AGGTTTATCT GCCCAACCTA GAAACCTTTA TCATCTGTAT AGAGGGGCTA
  CAGGGAATTA AAATCAGACT CTGGCACCAA ACGCTTGTGA TTTCTGTAAT GTTCTAGTTG
  K
  TCCTCCAAAA ACTGCCAGCT TTTATATACT GGAGGAGAAT CCAGGCTACC CCGGACTTTA
  TCTTGGCAGA ACTGTGTCTC CAAGGTCACC TCCTTCCGTA GCCAGCTTGT CTCCCCCAAC
  ACAGATTGCT CAGCCCCTTT TCAAAGTCAA TTTGGTTTGG CAATTGGTCT ACAACTCCGC
  ACCCCACTTC CCAAGGAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375635835	MGP_WTSI_8_96678393	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227603416					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375635835	MGP_WTSI_8_96678393	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94881121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20837	CpG island 20837	1567 bp distal
D8Jpk2	DNA segment, Chr 8, Japan, Kominami 2	1188 bp proximal
Mt3	metallothionein 3	347 bp downstream
Rr187118	regulatory region 187118	120 bp distal
Tssr78818	transcription start site region 78818	1742 bp downstream
Tssr78819	transcription start site region 78819	1489 bp downstream
Tssr78820	transcription start site region 78820	1460 bp downstream
Tssr78821	transcription start site region 78821	582 bp downstream
Tssr82483	transcription start site region 82483	501 bp upstream
Tssr82484	transcription start site region 82484	472 bp upstream
Tssr82485	transcription start site region 82485	347 bp upstream