rs227606015 SNP Detail

Summary

• ID
  rs227606015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86399956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccagggaca gacatggtaa aaggagagaa
  AGGTGCGCTG TGGCACTGGC CTCCCCCCGC CCCTTAAGTA AAATACATCT TTTTAAAAAT
  CTTAAACGCA GATGTGAAAC GAGGGTCCTG GTAAGGGGTT TGGTTCTGGG ACTCGGGCGT
  Y
  TCCCGGGCTG CACACCGAGC TCGGGTGGGT CTCTCCAGGT CCCTCCTAGC AGGGCGGCGC
  TGCGGGGAAA TTCCAGCAGG CAGCTCCTCC ACCGCGGTGA GACCTCATTT CCTAGGGAGG
  CGGCCGCTGG GCGCCGCCTT CATCCAGGCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319828360	CHEV_1_88368809	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227606015					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86399956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi508	CpG island 508	within coordinates
Gm41907	predicted gene, 41907	within coordinates
Rpl30-ps6	ribosomal protein L30, pseudogene 6	1425 bp upstream
Rr371652	regulatory region 371652	within coordinates
Rr396149	regulatory region 396149	1435 bp downstream
Rr396150	regulatory region 396150	562 bp downstream
Rr414594	regulatory region 414594	658 bp distal
Rr414595	regulatory region 414595	463 bp proximal
Tssr7756	transcription start site region 7756	1463 bp downstream
Tssr7757	transcription start site region 7757	1293 bp upstream