rs227607402 SNP Detail

Summary

• ID
  rs227607402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181671126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTCACT TACAAAATAA
  AAGACCAGAG GCGGGGAAAC CTTGTAAACT TTGGTTTATA GTTTCTTCAA AAGGACCAGG
  CCAGTGAGGC TGGAGAGCCA GCTCAGATGA TAAAGAACCC TGCCTTGAAA GAATAAGAAC
  TTTGTGAGCA CTTGAGACCC TCAGCACTAA AATTAAAACA AGAGGAAGGT GCTCTCAAAA
  R
  GCTGTAACTA TAATGAAGGG GACAGAGGTA GCTGGGGACA AACAGATCTC CCTGGACTCA
  GTTGGTAACA GCTAGGATTT TGTGAGACAC CCTGTCTCAA AGAGCAAGAT GTTGCGCAGT
  TGGAGAAAGA CAACTTACAC TAACCTTTGG CCTTCATGTA TACACTTGCA CACACACACA
  CACACACAAA TAAGCCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352618169	MGP_WTSI_1_183773692	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227607402					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352618169	MGP_WTSI_1_183773692	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181671126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1138	CpG island 1138	347 bp distal
Lbr	lamin B receptor	1193 bp upstream
Rr396678	regulatory region 396678	1039 bp downstream
Rr424803	regulatory region 424803	1193 bp distal
Rr424804	regulatory region 424804	692 bp distal
Rr424805	regulatory region 424805	974 bp distal
Rr424806	regulatory region 424806	1682 bp proximal
Tssr10531	transcription start site region 10531	1013 bp downstream
Tssr10532	transcription start site region 10532	996 bp downstream
Tssr15589	transcription start site region 15589	1248 bp upstream
Tssr15590	transcription start site region 15590	1177 bp upstream
Tssr15591	transcription start site region 15591	511 bp upstream
Tssr15592	transcription start site region 15592	1713 bp downstream