rs227607640 SNP Detail

Summary

• ID
  rs227607640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92110374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCATCA TACGCACTTG
  ACAGAAATGC CAAGGCCCTT TCACTTCCTC ATTCTACTGT CAACCGCAAA TGACGGATAA
  ACCCACAAGG GAGGTGAATT TAAGCAAGGG CCAAGTCTTT ACAAACAAGA ACTTGGCTTG
  CAGCGGCGAT CGAGTACAGA GCTCCTGCTC GCCTTGCCAA AACGTTTCCT GCAAGGAGAG
  Y
  CCAACTCCAG ATGGCAGGTA TCCTGACAAG CAGCTCGGTC TGAAGCTTCT GCCCAACCTG
  CCCTTGCCAG ACCCGACCGC AGCTCATCGA GGAGGTACCC TCTAAAGTCG TCACCTTGAG
  GAGACAAGCT CTGTCATAGT GCTCGCAGCC CCGCGGCCCC TGCGCCAGGT TGCGGACGCC
  ATCTTCCCGC GCCGTCGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365873141	MGP_WTSI_5_92391541	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227607640					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365873141	MGP_WTSI_5_92391541	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92110374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16049	CpG island 16049	within coordinates
Rchy1	ring finger and CHY zinc finger domain containing 1	within coordinates
Rr125457	regulatory region 125457	within coordinates
Rr367874	regulatory region 367874	within coordinates
Thap6	THAP domain containing 6	818 bp upstream
Tssr47269	transcription start site region 47269	87 bp downstream
Tssr47270	transcription start site region 47270	70 bp downstream
Tssr47271	transcription start site region 47271	42 bp downstream
Tssr47272	transcription start site region 47272	360 bp upstream
Tssr47273	transcription start site region 47273	407 bp upstream
Tssr47274	transcription start site region 47274	429 bp upstream
Tssr47275	transcription start site region 47275	802 bp upstream
Tssr47276	transcription start site region 47276	832 bp upstream
Tssr51828	transcription start site region 51828	1053 bp upstream
Tssr51829	transcription start site region 51829	903 bp upstream
Tssr51830	transcription start site region 51830	222 bp upstream
Tssr51831	transcription start site region 51831	191 bp upstream
Tssr51832	transcription start site region 51832	200 bp downstream
Tssr51833	transcription start site region 51833	324 bp downstream
Tssr51834	transcription start site region 51834	565 bp downstream
Tssr51835	transcription start site region 51835	591 bp downstream