rs227611901 SNP Detail

Summary

• ID
  rs227611901
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110807685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAATGTAAC GATGTTGAAC CAGACGAGAA CAATTTCCTT
  GAGCTTTAAC TGCCTGTAAC ACTAGTTGGA GCCTGTTCTT GACAACACCT ACAGTTGAGC
  W
  TCAAAGCAGC CTGATAGCTA CTGCTGTGTA ATTTGTAAGT TTTACTGCTT AATTCAACAA
  ACATTTACTT TGCTAAAAGT AGTGTTGCAC GCATTGGAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324159079	CHEV_12_112079461	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227611901					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110807685 () rs orientation: forward

Symbol	Name	Function Class
4921507G05Rik	RIKEN cDNA 4921507G05 gene	within coordinates
Cpgi5123	CpG island 5123	86 bp distal
Gm26912	predicted gene, 26912	1025 bp downstream
Mok	MOK protein kinase	312 bp upstream
Rr403503	regulatory region 403503	116 bp downstream
Rr473007	regulatory region 473007	335 bp distal
Rr473008	regulatory region 473008	205 bp distal
Rr473009	regulatory region 473009	within coordinates
Rr473010	regulatory region 473010	612 bp proximal
Rr473011	regulatory region 473011	902 bp proximal
Tssr115236	transcription start site region 115236	214 bp downstream
Tssr117796	transcription start site region 117796	390 bp upstream
Tssr117797	transcription start site region 117797	301 bp upstream