rs227612652 SNP Detail

Summary

• ID
  rs227612652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:121067564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTGTGA CTCAGTGACG
  CTTTGGCACC TGGGAGTATT TTATGCATAA GTTTAGTCTC AGACAGGCTT ATGTTATATA
  ATAGACTATC TTTAACATGA CAATAATCCT ACTGGCTAAC AAGAACTCAG AACCAGAATC
  ACAACAGTCC ACTCAAAACA CTAATCTTTA AAAGCCTGCC GGGATTGATG GCCCCCTCAC
  Y
  GCCCAAATAG ATCAATTCTA GACTTTTATT TAATGAGACA GCCAGGGAGA AATCACTACT
  TCCCATCACC GATAGATGGT CCGATCTGCC TTTCAATCAA GCACATTTCA AATGTATTCA
  TAGAATACGT TTCACACCTC CTCTGTCGTG TTTATTATGC TTCTGGTTCT GCGCTGTTGC
  AAATGCATAG CTGAAGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324851437	CHEV_14_121229374	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227612652					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:121067564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6879	CpG island 6879	1770 bp proximal
Rr287001	regulatory region 287001	1364 bp distal
Rr287002	regulatory region 287002	564 bp distal
Rr287003	regulatory region 287003	1437 bp proximal
Rr390218	regulatory region 390218	1910 bp upstream
Rr404289	regulatory region 404289	1648 bp upstream