rs227613393 SNP Detail

Summary

• ID
  rs227613393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:95251093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGCCTG GAAGTCACAG
  GGTACCCCAA AACGAGAGTG TGCAGGGTGT CCGAAATGGT GGCGGAGGGG GAGGGGACTG
  GAAGCGGCTG GTTCTTTTTC TCCAAATTCC GGCAGAATGG TGTGGCAAAG TCTCTCGCAG
  ACACTGTCAC CCACAGATCG CCTGTGAAGA AACAATGGAA CAGAGATTGG GTCAGTCTGG
  R
  CTGAACCCCT ACGGCCGAGG TGGGGGTGGG TAAACAGACA CGTGGAAAAT CCCAGGGACT
  CCTCCGCCTG CGTGTTCTGT ACCATTTAAC CCCGAGCATC CAGCTAACGC CCTGCCCAAC
  TCTGGGGAAA GACGGGTAAA AAGGGCAGAG ATCCAAGACA CTAAAGTTGG CCGGAGTAGA
  GGGGTGAGGA GGGAGACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381349722	MGP_WTSI_10_94877865	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227613393					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381349722	MGP_WTSI_10_94877865	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:95251093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2139	CpG island 2139	within coordinates
Gm33230	predicted gene, 33230	628 bp downstream
Rr225467	regulatory region 225467	within coordinates
Rr385140	regulatory region 385140	within coordinates
Socs2	suppressor of cytokine signaling 2	within coordinates
Tssr95358	transcription start site region 95358	360 bp upstream
Tssr95359	transcription start site region 95359	1752 bp upstream
Tssr99030	transcription start site region 99030	1630 bp upstream
Tssr99031	transcription start site region 99031	11 bp upstream
Tssr99032	transcription start site region 99032	54 bp downstream
Tssr99033	transcription start site region 99033	234 bp downstream
Tssr99034	transcription start site region 99034	266 bp downstream
Tssr99035	transcription start site region 99035	742 bp downstream
Tssr99036	transcription start site region 99036	776 bp downstream
Tssr99037	transcription start site region 99037	1485 bp downstream
Tssr99038	transcription start site region 99038	1549 bp downstream
Tssr99039	transcription start site region 99039	1619 bp downstream
Tssr99040	transcription start site region 99040	1809 bp downstream
Tssr99041	transcription start site region 99041	1868 bp downstream