rs227616377 SNP Detail

Summary

• ID
  rs227616377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180829983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGCTCC TCAGGTCTTC
  CCAAAGCCGA CCCGGGCCAC TGGTGGGCCA GCTTCTTTTT CGGGAAATCC ACACTCCCGT
  TCATGACTAC AGTGTTGGAG TCTCCTGAGC GGTGAGTCCA TCTTCCATGT GGTTGTGGGG
  GTGGCCCCAA TTAAAGCAAA TGCCGACCCA GTGACCTATG CTCTCCTTAC AGCTCGGCAG
  R
  ATCCCCCCAG GTCTCCAGAA GCCCGATGAC CTGTGGCCTG ACTCCTGAAA CCATGAAGCA
  GCAGCCAGTC ATCCATTCTG GCCAGACCAA CCCCAGGGAC CTTTCCTGAC CTATCAGAAT
  CTGCAGCCTG CCCAAGCTGA AGTGGTGCTA GGCCAGTGCC TACCCTCTCG ACCCTCCCTG
  TAAACTAGGA AGGCTGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356774988	MGP_WTSI_2_180922895	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227616377					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356774988	MGP_WTSI_2_180922895	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180829983 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	467 bp upstream
Cpgi12916	CpG island 12916	176 bp distal
Gm75115	predicted gene, 75115	477 bp upstream
Gm75119	predicted gene, 75119	944 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	within coordinates
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	844 bp distal
Rr572940	regulatory region 572940	893 bp distal
Rr572941	regulatory region 572941	488 bp distal
Rr572942	regulatory region 572942	within coordinates
Rr572943	regulatory region 572943	454 bp proximal
Rr572944	regulatory region 572944	955 bp proximal
Tssr22287	transcription start site region 22287	843 bp downstream
Tssr22288	transcription start site region 22288	771 bp downstream
Tssr22289	transcription start site region 22289	595 bp downstream
Tssr22290	transcription start site region 22290	572 bp downstream
Tssr22291	transcription start site region 22291	538 bp downstream
Tssr22292	transcription start site region 22292	382 bp downstream
Tssr22293	transcription start site region 22293	274 bp downstream