rs227617804 SNP Detail

Summary

• ID
  rs227617804
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16679230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGCAAG ATTGGTGTAA
  GGAGCTGGAA GTGGAGGTGC ACAGGGCCCT CCTGATCACG GGCATCCCTG AGCGCCTGCA
  GCAGGCGGAC ATCGAAGCTA CCCTGAGTCC GAACTTGCAG CCCCTGGGCA ACTACAGGCT
  TCGGACTGTG AGAGCTGTAA CCAAAGAGAA GTCTCAGGCA GCCCTTGTAG AATTTGGGGC
  M
  GACTTCGATC ACTCTGCCAT ACCTATCCAC ATTAGGGGAG AGAATGGGAT TTGGAAAATC
  CTGAGTAAGG ACCGCGGGCA AGATGCGCGG GTCCTTAGGC AGATGAGGCG CCTGTTGCTG
  GATGAAAGGC CCATGGATGA CTTCAGAGAA ATAGCCATCC CTCTGGTATT GGAGGCCCAA
  GCCCAGGCCA AGGGATTAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370704090	MGP_WTSI_7_17530654	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227617804					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370704090	MGP_WTSI_7_17530654	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16679230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	within coordinates
Cpgi18407	CpG island 18407	955 bp proximal
Gm71929	predicted gene, 71929	within coordinates
Pnma8b	PNMA family member 8B	within coordinates
Rr368243	regulatory region 368243	648 bp downstream
Rr642821	regulatory region 642821	1936 bp distal
Rr642822	regulatory region 642822	613 bp distal
Rr642823	regulatory region 642823	679 bp distal
Rr642824	regulatory region 642824	338 bp proximal
Tssr64660	transcription start site region 64660	585 bp downstream
Tssr64661	transcription start site region 64661	389 bp upstream
Tssr70792	transcription start site region 70792	344 bp downstream