rs227619753 SNP Detail

Summary

• ID
  rs227619753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146205518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGAGGCA GCGCGGCCAC
  GTCCCTCACC CCGCCGTCGG TCGCGGACCT CCCTCCCCGC GCTCCCGAGT CCGCCCCGGG
  GCGTCCTCTT ACCTCGCCCT ACCCAGCCCC TCCAGAGGCG GAAGGCGCCG GCCGGGCGTC
  GGGCCGCACC GCCCCCGTCG CCACCGCGCC CACCGGCCGC TCCGCCCCTT CTCTCTCTCT
  Y
  GCGCGCGCGG GGGGAGCCCG CGGCCGTCCC GGGGGGAGGG GGAGGGGGCG TCGGCGCGCA
  TGCGCGGCGC GCACAGCCCC GGAAACTTCG ACGAAGTTCG GAGCCCCGCC CCCGCCGTCC
  CGCGACCTGC CGCCCCCTGC CCGGACTGAC GAGTCGGCCC GGCTGTCCCG AGCGCCATGT
  CGGGTTCTTC TAGCGTCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss360119566	MGP_WTSI_3_146162727	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227619753					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360119566	MGP_WTSI_3_146162727	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146205518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13920	CpG island 13920	within coordinates
Gng5	G protein subunit gamma 5	73 bp upstream
Rr77342	regulatory region 77342	within coordinates
Rr398118	regulatory region 398118	629 bp upstream
Spata1	spermatogenesis associated 1	10 bp upstream
Tssr32351	transcription start site region 32351	within coordinates
Tssr32352	transcription start site region 32352	65 bp upstream
Tssr32353	transcription start site region 32353	87 bp upstream
Tssr32354	transcription start site region 32354	308 bp upstream
Tssr32355	transcription start site region 32355	368 bp upstream
Tssr32356	transcription start site region 32356	398 bp upstream
Tssr32357	transcription start site region 32357	426 bp upstream
Tssr36036	transcription start site region 36036	within coordinates
Tssr36037	transcription start site region 36037	44 bp downstream
Tssr36038	transcription start site region 36038	325 bp downstream