rs227623639 SNP Detail

Summary

• ID
  rs227623639
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96245328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCAGTGAA CAAGTCATTT TGTGAGCCAT
  ATCTCACTTA TGGTCTTCAA TGCTTCTCTT AAAAATGCCA TGCCCCAACG GCTCTCAGCT
  CTAAAAATCC ATTCTTACTC AGAATGGAAA AAAAAAAATC TGTCCTTACC CATTAACAAA
  M
  TACTCTTAAA AAAGGATTTC AAAAAGGTAA AATTGTCTAA ATAGAAAGGC AATAAATGGA
  ATACACTTGT CCACCTTCAC TAACATTTTT TTTGACCCCT CACCTTAAAA GCAGCACAAA
  ACCCAGAAGA CCGATCAACT CGGATTCACT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323108161	CHEV_9_96263694	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227623639					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96245328 () rs orientation: forward

Symbol	Name	Function Class
Atp1b3	ATPase, Na+/K+ transporting, beta 3 polypeptide	within coordinates
Cpgi22162	CpG island 22162	228 bp proximal
Gm68867	predicted gene, 68867	within coordinates
Rr684945	regulatory region 684945	within coordinates
Rr684946	regulatory region 684946	1157 bp proximal
Tssr86601	transcription start site region 86601	649 bp upstream
Tssr90956	transcription start site region 90956	1024 bp downstream
Tssr90957	transcription start site region 90957	1132 bp downstream
Tssr90958	transcription start site region 90958	1156 bp downstream