rs227648243 SNP Detail

Summary

• ID
  rs227648243
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21156832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTCCGCG GCGCCTTCTT
  CTCCTCGGTG CGAACCTTCT TGGCAGACAT AGAGCCCGGC GGCTCCCGCG AGGAAGGCTG
  TACTTTGCCA GATGCTTCCT TCTCAGAGAG GAGAGCCACG GCGCCGCGAG CTGGGTTCGG
  CGGTTCCGCC ATTTTGCGCT CCTGTTGTAT TTACTCTCCG CCGCTCCCCG GAGCGGGGGC
  K
  CGGGGCGGGG TGCCTAGGTC CAGGCCGAGC TCCCATTGGG CGCGCTAAAC TGAGAGATCC
  CGGAACAAAC CAATCAAAGA CGCGGACAGA AGCCGTCGGG GTGGGGTCAC CGAGCGGACC
  TTCATTTGGA GGTCAGAGGT CTTTTCGGCG CGGCTGATGG AGAGCTCGCT GAGAAGGGAG
  GATCTCCCGA CCGTCGCTCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364204234	MGP_WTSI_5_20457652	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227648243					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364204234	MGP_WTSI_5_20457652	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21156832 () rs orientation: forward

Symbol	Name	Function Class
A630072M18Rik	RIKEN cDNA A630072M18 gene	within coordinates
Cpgi15559	CpG island 15559	within coordinates
Rr1248	regulatory region 1248	848 bp distal
Rr377666	regulatory region 377666	within coordinates
Rr607830	regulatory region 607830	835 bp distal
Rr607831	regulatory region 607831	within coordinates
Rsbn1l	round spermatid basic protein 1-like	within coordinates
Tssr45282	transcription start site region 45282	1059 bp downstream
Tssr45283	transcription start site region 45283	884 bp downstream
Tssr45284	transcription start site region 45284	862 bp downstream
Tssr45285	transcription start site region 45285	840 bp downstream
Tssr45286	transcription start site region 45286	789 bp downstream
Tssr45287	transcription start site region 45287	639 bp downstream
Tssr45288	transcription start site region 45288	126 bp upstream
Tssr50223	transcription start site region 50223	10 bp upstream