rs227651239 SNP Detail

Summary

• ID
  rs227651239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82601221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGAGCGC AGGTTTACCA
  GTTATGGGGC CTAACGCCCA CCAAAGACAG AGCAAGTGGC ACGAGAGACA AAAGGCATGA
  AAGAAAATGG AAGCAGTGGT GGGTGCCCAC CTTGCTGGCT CTAGCCCTTG CTTCCCTCTG
  CTGGCCGACC TTGGGAAGAT GACTCAACTT CTCTGATCTT TGATTATCAT ATAAAATAAG
  Y
  CTGTACTCAA GGTTGGCTGT GAGTACAAGC AGGGCATCAG GTGGAAGGGC CTGTGCTCCA
  GGCGGGTGCT CCAGGTAGGT GCTCCAGGCA GGTGCTCCAG GCAGGTGCTC CAGACGGGTG
  TTCAGTGGCT ACTAGAAAAC AGCACTGATG TGTCTGCCGT TACATTTCAA AAAAGAAGTC
  ACCTGAGGCT TGGCTGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436703	MGP_WTSI_18_82752488	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227651239					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436703	MGP_WTSI_18_82752488	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82601221 () rs orientation: forward

Symbol	Name	Function Class
Gm58829	predicted gene, 58829	1526 bp downstream
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	569 bp proximal
Tssr152152	transcription start site region 152152	1012 bp upstream
Tssr152153	transcription start site region 152153	1040 bp upstream
Tssr152154	transcription start site region 152154	1154 bp upstream
Tssr152155	transcription start site region 152155	1192 bp upstream
Tssr152156	transcription start site region 152156	1265 bp upstream
Tssr152157	transcription start site region 152157	1316 bp upstream
Tssr152158	transcription start site region 152158	1373 bp upstream
Tssr152159	transcription start site region 152159	1403 bp upstream
Tssr152160	transcription start site region 152160	1453 bp upstream
Tssr152161	transcription start site region 152161	1470 bp upstream
Tssr152162	transcription start site region 152162	1486 bp upstream
Tssr152163	transcription start site region 152163	1511 bp upstream
Tssr152164	transcription start site region 152164	1551 bp upstream
Tssr152165	transcription start site region 152165	1604 bp upstream
Tssr152166	transcription start site region 152166	1670 bp upstream
Tssr152167	transcription start site region 152167	1685 bp upstream
Tssr152168	transcription start site region 152168	1720 bp upstream
Tssr152169	transcription start site region 152169	1781 bp upstream
Tssr152170	transcription start site region 152170	1862 bp upstream
Tssr152171	transcription start site region 152171	1922 bp upstream
Tssr154083	transcription start site region 154083	1121 bp downstream
Tssr154084	transcription start site region 154084	1145 bp downstream
Tssr154085	transcription start site region 154085	1417 bp downstream
Tssr154086	transcription start site region 154086	1972 bp downstream