rs227666474 SNP Detail

Summary

• ID
  rs227666474
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127922327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACACCTA AGACCATTAT
  TCTTTACTTC TGTCTTTTAG GTGTCTGCCT TATTGGGCAG AATCCCTTCT GCTGTAGGCT
  ACCAGCCCAC CCTAGCCACC GACATGGGCA CAATGCAGGA AAGGATCACC ACCACCAAGA
  AGGGATCGAT CACCTCGGTG CAGGTAATGA AAAAAACCAA CCTAGGGAGA TAATAACACC
  M
  TATTATACTT GGGGCTAGAG AGATAATTCA CAGTTAAGAA TGCTTTTGGC TCTTCCGGTT
  GCCCAGTGTC CATCAGGTGG CTTACCATCT GTAACTCCAG CTTAGGAGAC ATGGCGCCCT
  CTTTTGGCTT CCATGGGTAC CTGCATATAC AGTAAACATG GTCTGGGGCG CGGAGATGTA
  CAAAAATCAT GTGCTAGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323531641	CHEV_10_127523514	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227666474					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127922327 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Gm55458	predicted gene, 55458	1098 bp downstream
Mir677	microRNA 677	1095 bp downstream
Rr441098	regulatory region 441098	11 bp proximal
Rr441099	regulatory region 441099	111 bp proximal
Tssr96322	transcription start site region 96322	930 bp downstream
Tssr96323	transcription start site region 96323	361 bp downstream
Tssr96324	transcription start site region 96324	291 bp downstream
Tssr96325	transcription start site region 96325	152 bp downstream
Tssr96326	transcription start site region 96326	136 bp downstream
Tssr96327	transcription start site region 96327	109 bp downstream
Tssr96328	transcription start site region 96328	69 bp downstream
Tssr96329	transcription start site region 96329	1855 bp upstream
Tssr96330	transcription start site region 96330	1915 bp upstream