rs227676159 SNP Detail

Summary

• ID
  rs227676159
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44382390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAAAAA AAAAAAGAAC
  AAAGCAAACA CACACTAACC TCCCCATTCC ACCCCGCCCC CCCAACCTCC CTGCAAAACC
  CACACCATCC ATCTTGAGAC CATGATACCT TTTCTACTCT GGGGACTTGC AAACCTCTCT
  GGACTATTAG CTTTCATCCA AGTGTGAGAA AGCACCCAGG GGCTTCCTGT CCCCTGAAGG
  M
  AGGACATTCC AGGAAGAGGA GTGAGCATGA CTTCCCAGGG CTGGGGTAAC AGTTCTTCAT
  GTACCTGTGT GCTGCGTCCA TGTGGCCACC ATGTGACAGT GGAGACCTGG CCTGTCCCCT
  ACCTAGCAGT CAGCTGATGC TGTGTTTGAC TCAATGTTAG ATTCTTGGTT CCCTGCTGCC
  AGAGTGTAAC CTCAAGTTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552052	MGP_WTSI_19_44468441	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227676159					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552052	MGP_WTSI_19_44468441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44382390 () rs orientation: forward

Symbol	Name	Function Class
Rr548236	regulatory region 548236	76 bp proximal
Rr548237	regulatory region 548237	711 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	499 bp downstream
Tssr159446	transcription start site region 159446	631 bp downstream
Tssr159447	transcription start site region 159447	808 bp downstream
Tssr159448	transcription start site region 159448	840 bp downstream
Tssr159449	transcription start site region 159449	892 bp downstream
Tssr159450	transcription start site region 159450	919 bp downstream
Tssr159451	transcription start site region 159451	991 bp downstream
Tssr159452	transcription start site region 159452	1281 bp downstream
Tssr159453	transcription start site region 159453	1340 bp downstream
Tssr159454	transcription start site region 159454	1372 bp downstream
Tssr159455	transcription start site region 159455	1665 bp downstream
Tssr159456	transcription start site region 159456	1787 bp downstream
Tssr159457	transcription start site region 159457	1831 bp downstream
Tssr159458	transcription start site region 159458	1861 bp downstream
Tssr159459	transcription start site region 159459	1951 bp downstream
Tssr159460	transcription start site region 159460	1988 bp downstream