rs227676373 SNP Detail

Summary

• ID
  rs227676373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4108309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGAATG AGTCTCAAGC
  TCAGGTGGCT TCTTGTGAAC CAGTCTCCTA ATGAATAAAG GAGCCAATCA CTGGGCAAGT
  AGGAGGGACT TCTGGGTTGG ATGGACAAAA ATAGGTGGCA GGAGAGAGTT AGACCCTCTT
  TGGAATGGGA CAGCAGACAG GTAAGATGTA GTTGCTAGAG TTTCTGGTAT CATGGCAAAT
  Y
  TGCAAGGAAT TGGATTTTTT AAAAAAAAAA TGTATTTATT ATTATAAATA AGTACAGTGT
  AGCTGTCTTC AGGTGCACCA GAAGAGGGCA TCAGATCTCG TTACAGGTGG TTGTGAGCCA
  CCATGTGGTT GCTGTGATTT TAACACTGAG CCTTCTGAAG AACAGTCAGT GCTCTTATCT
  CAGCCAGTAA TTGGATTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324212495	CHEV_13_4057555	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227676373					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4108309 () rs orientation: forward

Symbol	Name	Function Class
Akr1c14	aldo-keto reductase family 1, member C14	within coordinates
Rr474440	regulatory region 474440	74 bp proximal
Rr474441	regulatory region 474441	1127 bp proximal
Tssr118214	transcription start site region 118214	1256 bp upstream
Tssr118215	transcription start site region 118215	1278 bp upstream
Tssr118216	transcription start site region 118216	1362 bp upstream