CCTCC TCCTCCTCCT CCTCCTCCTC
Y
TCCTCCTTCT CTGGCTCTGT CTCCC
Y = C/T
Note: Sequence in lower case indicates low-complexity or repetitive sequence |
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | LG/J |
SM/J |
|---|---|---|---|---|---|---|---|
| ss322198940 | CHEV_7_51735383 | CHEVERUD | SCREENING_POP | f | SNP | C | T |
| SNP Consensus Information | |||||||
| SNP | Consensus Type | LG/J |
SM/J |
||||
| rs227679602 | SNP | C | T | ||||
| Location: Chr7:44129437 () rs orientation: forward | ||||||||
| Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
|---|---|---|---|---|---|---|---|---|
| Tssr2227 | transcription start site region 2227 | 993 bp downstream | ||||||
| Tssr2228 | transcription start site region 2228 | 65 bp upstream | ||||||
| Tssr2229 | transcription start site region 2229 | 341 bp upstream | ||||||
| Tssr2230 | transcription start site region 2230 | 520 bp upstream | ||||||
| Tssr2231 | transcription start site region 2231 | 653 bp upstream | ||||||
| Tssr2232 | transcription start site region 2232 | 828 bp upstream | ||||||
| Tssr2233 | transcription start site region 2233 | 861 bp upstream | ||||||
| Tssr2234 | transcription start site region 2234 | 1020 bp upstream | ||||||
| Tssr2235 | transcription start site region 2235 | 1654 bp upstream | ||||||
| Tssr66260 | transcription start site region 66260 | 1990 bp downstream | ||||||
| Tssr66261 | transcription start site region 66261 | 1969 bp downstream | ||||||
| Tssr66262 | transcription start site region 66262 | 1962 bp downstream | ||||||
| Tssr66263 | transcription start site region 66263 | 1950 bp downstream | ||||||
| Tssr66264 | transcription start site region 66264 | 1926 bp downstream | ||||||
| Tssr66265 | transcription start site region 66265 | 1883 bp downstream | ||||||
| Tssr66266 | transcription start site region 66266 | 1866 bp downstream | ||||||
| Tssr66267 | transcription start site region 66267 | 1829 bp downstream | ||||||
| Tssr66268 | transcription start site region 66268 | 1813 bp downstream | ||||||
| Tssr66269 | transcription start site region 66269 | 1777 bp downstream | ||||||
| Tssr66270 | transcription start site region 66270 | 1742 bp downstream | ||||||
| Tssr66271 | transcription start site region 66271 | 1710 bp downstream | ||||||
| Tssr66272 | transcription start site region 66272 | 1658 bp downstream | ||||||
| Tssr66273 | transcription start site region 66273 | 1640 bp downstream | ||||||
| Tssr66274 | transcription start site region 66274 | 1635 bp downstream | ||||||
| Tssr66275 | transcription start site region 66275 | 1615 bp downstream | ||||||
| Tssr66276 | transcription start site region 66276 | 1595 bp downstream | ||||||
| Tssr66277 | transcription start site region 66277 | 1575 bp downstream | ||||||
| Tssr66278 | transcription start site region 66278 | 1531 bp downstream | ||||||
| Tssr66279 | transcription start site region 66279 | 1486 bp downstream | ||||||
| Tssr66280 | transcription start site region 66280 | 1464 bp downstream | ||||||
| Tssr66281 | transcription start site region 66281 | 1424 bp downstream | ||||||
| Tssr66282 | transcription start site region 66282 | 1407 bp downstream | ||||||
| Tssr66283 | transcription start site region 66283 | 1393 bp downstream | ||||||
| Tssr66284 | transcription start site region 66284 | 1381 bp downstream | ||||||
| Tssr66285 | transcription start site region 66285 | 1367 bp downstream | ||||||
| Tssr66286 | transcription start site region 66286 | 1328 bp downstream | ||||||
| Tssr66287 | transcription start site region 66287 | 1292 bp downstream | ||||||
| Tssr66288 | transcription start site region 66288 | 1267 bp downstream | ||||||
| Tssr66289 | transcription start site region 66289 | 1185 bp downstream | ||||||
| Tssr66290 | transcription start site region 66290 | 1147 bp downstream | ||||||
| Tssr66291 | transcription start site region 66291 | 1121 bp downstream | ||||||
| Tssr66292 | transcription start site region 66292 | 1089 bp downstream | ||||||
| Tssr66293 | transcription start site region 66293 | 1067 bp downstream | ||||||
| Tssr66294 | transcription start site region 66294 | 1043 bp downstream | ||||||
| Tssr66295 | transcription start site region 66295 | 778 bp downstream | ||||||
| Tssr66296 | transcription start site region 66296 | 607 bp downstream | ||||||
| Tssr66297 | transcription start site region 66297 | 583 bp downstream | ||||||
| Tssr66298 | transcription start site region 66298 | 528 bp downstream | ||||||
| Tssr66299 | transcription start site region 66299 | 508 bp downstream | ||||||
| Tssr66300 | transcription start site region 66300 | 485 bp downstream | ||||||
| Tssr66301 | transcription start site region 66301 | 469 bp downstream | ||||||
| Tssr66302 | transcription start site region 66302 | 428 bp downstream | ||||||
| Tssr66303 | transcription start site region 66303 | 419 bp downstream | ||||||
| Tssr66304 | transcription start site region 66304 | 414 bp downstream | ||||||
| Tssr66305 | transcription start site region 66305 | 375 bp downstream | ||||||
| Tssr66306 | transcription start site region 66306 | 321 bp downstream | ||||||
| Tssr66307 | transcription start site region 66307 | 272 bp downstream | ||||||
| Tssr66308 | transcription start site region 66308 | 255 bp downstream | ||||||
| Tssr66309 | transcription start site region 66309 | 205 bp downstream | ||||||
| Tssr66310 | transcription start site region 66310 | 136 bp downstream | ||||||
| Tssr66311 | transcription start site region 66311 | 113 bp downstream | ||||||
| Tssr66312 | transcription start site region 66312 | 94 bp downstream | ||||||
| Tssr66313 | transcription start site region 66313 | 84 bp downstream | ||||||
| Tssr66314 | transcription start site region 66314 | 66 bp downstream | ||||||
| Tssr66315 | transcription start site region 66315 | 59 bp downstream | ||||||
| Tssr66316 | transcription start site region 66316 | within coordinates | ||||||
| Tssr66317 | transcription start site region 66317 | 9 bp upstream | ||||||
| Tssr66318 | transcription start site region 66318 | 54 bp upstream | ||||||
| Tssr66319 | transcription start site region 66319 | 77 bp upstream | ||||||
| Tssr66320 | transcription start site region 66320 | 104 bp upstream | ||||||
| Tssr66321 | transcription start site region 66321 | 122 bp upstream | ||||||
| Tssr66322 | transcription start site region 66322 | 142 bp upstream | ||||||
| Tssr66323 | transcription start site region 66323 | 188 bp upstream | ||||||
| Tssr66324 | transcription start site region 66324 | 217 bp upstream | ||||||
| Tssr66325 | transcription start site region 66325 | 247 bp upstream | ||||||
| Tssr66326 | transcription start site region 66326 | 288 bp upstream | ||||||
| Tssr66327 | transcription start site region 66327 | 302 bp upstream | ||||||
| Tssr66328 | transcription start site region 66328 | 318 bp upstream | ||||||
| Tssr66329 | transcription start site region 66329 | 357 bp upstream | ||||||
| Tssr66330 | transcription start site region 66330 | 376 bp upstream | ||||||
| Tssr66331 | transcription start site region 66331 | 390 bp upstream | ||||||
| Tssr66332 | transcription start site region 66332 | 411 bp upstream | ||||||
| Tssr66333 | transcription start site region 66333 | 459 bp upstream | ||||||
| Tssr66334 | transcription start site region 66334 | 471 bp upstream | ||||||
| Tssr66335 | transcription start site region 66335 | 480 bp upstream | ||||||
| Tssr66336 | transcription start site region 66336 | 489 bp upstream | ||||||
| Tssr66337 | transcription start site region 66337 | 507 bp upstream | ||||||
| Tssr66338 | transcription start site region 66338 | 563 bp upstream | ||||||
| Tssr66339 | transcription start site region 66339 | 614 bp upstream | ||||||
| Tssr66340 | transcription start site region 66340 | 659 bp upstream | ||||||
| Tssr66341 | transcription start site region 66341 | 704 bp upstream | ||||||
| Tssr66342 | transcription start site region 66342 | 766 bp upstream | ||||||
| Tssr66343 | transcription start site region 66343 | 798 bp upstream | ||||||
| Tssr66344 | transcription start site region 66344 | 943 bp upstream | ||||||
| Tssr66345 | transcription start site region 66345 | 976 bp upstream | ||||||
| Tssr66346 | transcription start site region 66346 | 1032 bp upstream | ||||||
| Tssr66347 | transcription start site region 66347 | 1070 bp upstream | ||||||
| Tssr66348 | transcription start site region 66348 | 1111 bp upstream | ||||||
| Tssr66349 | transcription start site region 66349 | 1135 bp upstream | ||||||
| Tssr66350 | transcription start site region 66350 | 1163 bp upstream | ||||||
| Tssr66351 | transcription start site region 66351 | 1171 bp upstream | ||||||
| Tssr66352 | transcription start site region 66352 | 1207 bp upstream | ||||||
| Tssr66353 | transcription start site region 66353 | 1281 bp upstream | ||||||
| Tssr66354 | transcription start site region 66354 | 1295 bp upstream | ||||||
| Tssr66355 | transcription start site region 66355 | 1322 bp upstream | ||||||
| Tssr66356 | transcription start site region 66356 | 1339 bp upstream | ||||||
| Tssr66357 | transcription start site region 66357 | 1353 bp upstream | ||||||
| Tssr66358 | transcription start site region 66358 | 1365 bp upstream | ||||||
| Tssr66359 | transcription start site region 66359 | 1391 bp upstream | ||||||
| Tssr66360 | transcription start site region 66360 | 1403 bp upstream | ||||||
| Tssr66361 | transcription start site region 66361 | 1429 bp upstream | ||||||
| Tssr66362 | transcription start site region 66362 | 1461 bp upstream | ||||||
| Tssr66363 | transcription start site region 66363 | 1478 bp upstream | ||||||
| Tssr66364 | transcription start site region 66364 | 1511 bp upstream | ||||||
| Tssr66365 | transcription start site region 66365 | 1531 bp upstream | ||||||
| Tssr66366 | transcription start site region 66366 | 1551 bp upstream | ||||||
| Tssr66367 | transcription start site region 66367 | 1579 bp upstream | ||||||
| Tssr66368 | transcription start site region 66368 | 1601 bp upstream | ||||||
| Tssr66369 | transcription start site region 66369 | 1635 bp upstream | ||||||
| Tssr66370 | transcription start site region 66370 | 1677 bp upstream | ||||||
| Tssr72200 | transcription start site region 72200 | 1572 bp upstream | ||||||
| Tssr72201 | transcription start site region 72201 | 1062 bp upstream | ||||||
| Tssr72202 | transcription start site region 72202 | 205 bp upstream | ||||||
| Tssr72203 | transcription start site region 72203 | 166 bp downstream | ||||||
| Tssr72204 | transcription start site region 72204 | 762 bp downstream | ||||||
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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