rs227682117 SNP Detail

Summary

• ID
  rs227682117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153063224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATACCTAG TTCTAACCAG GAAGTAGACA
  AAGCATTGAA GAGCAACAGA GGCAAGATAG GGTACTGCAG ACAAGCCGAC ATCTCTAAAA
  TCTAGCGCAA AATGAGCAAC AGAATGGATA TTCTAATTTT CTTAACCTAG ACTCAACTCT
  Y
  TTCTGCTCTG TCCAAATAAT GTGGAGATTC TTCTCACTCA GAATCAGTGC CCAGCTACTG
  CTAACACTTC AGTTCCTTGA GAGCAGGCAT CTATAATTTT TTTCTTCCAG TAGCAGCTAT
  GCGGTGGACA gagagagagg gggagaggga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071248	CHEV_1_155034608	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227682117					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153063224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	1011 bp distal
Lamc2	laminin, gamma 2	1031 bp upstream
Rr13130	regulatory region 13130	24 bp distal
Rr25076	regulatory region 25076	768 bp proximal
Rr28719	regulatory region 28719	823 bp distal
Tssr14250	transcription start site region 14250	1422 bp upstream
Tssr14251	transcription start site region 14251	1386 bp upstream
Tssr14252	transcription start site region 14252	1356 bp upstream
Tssr14253	transcription start site region 14253	1342 bp upstream
Tssr14254	transcription start site region 14254	1323 bp upstream