rs227683722 SNP Detail

Summary

• ID
  rs227683722
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35028356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACGCTTGC GCACACGGTC GGGAAGCCGA
  CAGCCGCGAA CGCCGCGCTg gagggagggc gcaccgagag agggagggcg cggagaaagg
  agggagctaa gaagggaggg agggcatcga ggagggaggg cgcgccgaag gagggaggac
  K
  cagagaaagg agggagtaag gagggaggga gggcgcagag gaaggagggc gagggtgtga
  ggCCGCGGGG AGACTGGGGT TGGCCTGGAG GCCTCCCTGG CCTGGAGAGA GACGGCCGGG
  GTGCGGGAGG CTGGATCGGG TGAGGGCAAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899099	CHEV_9_34924645	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227683722					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35028356 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	within coordinates
Cpgi21550	CpG island 21550	within coordinates
Gm57537	predicted gene, 57537	140 bp downstream
Rr676432	regulatory region 676432	312 bp distal
Rr676433	regulatory region 676433	198 bp distal
Rr676434	regulatory region 676434	16 bp distal
Rr676435	regulatory region 676435	within coordinates
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	196 bp upstream
Tssr84325	transcription start site region 84325	293 bp downstream
Tssr84326	transcription start site region 84326	114 bp downstream
Tssr88717	transcription start site region 88717	267 bp upstream
Tssr88718	transcription start site region 88718	169 bp upstream
Tssr88719	transcription start site region 88719	74 bp upstream
Tssr88720	transcription start site region 88720	634 bp downstream