rs227686230 SNP Detail

Summary

• ID
  rs227686230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87003087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGAATTA AAAAAAAAAT
  AAGATTTTTT TAAAAAAGAT TTGTTTATTT TATGTATGCG AGTATACTGT CTCTCTTCAG
  ACACAGCAGA AGAGGGCATC GGATCCCATA ACAGAGGGTT GTGAGCCACC ATGTGGTTGC
  TGGGAATAGA ACTCAGGACC TGTGGAAGAA CAACCATTGC CCTTAACTTC TGAGATCTCT
  Y
  TCCAGCCCCA AAGCACAAGA TTTAAGTGCT GCCTAAGTGT GTTTGTGTGT GTGCACATGT
  GTGCATGTGA GTAAATTCTA TAGAGATCAA CTGGGTATAT AGGTTTGAGA GAGGTATATT
  TCTCTTTTTC TATTGAGATT TATTTTATGA ATATGAGTGT TTTGCCTGCA TGTTTGTGAC
  GGCACCACAT TTGTGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772685	CHEV_11_86925763	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227686230					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87003087 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir301	microRNA 301			743 bp upstream
Rr453748	regulatory region 453748			1751 bp distal
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103909	transcription start site region 103909			817 bp upstream