rs227687874 SNP Detail

Summary

• ID
  rs227687874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85275538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTGAT GTCGTTTTGG GTGAGAGCAC AAATAGCTGT
  AAATAATGTG GTTAGGGCTC CGAGGCATAG TATAGTTGTT AAAATAAAGT TATTATTAGT
  Y
  GTGAGTGGGT GAAATCGGAC CAGTAGAAAG ATTCCTGCAA CTACTATTGT ACTTGAGTGT
  AGTAGCGCTG AAACTGGTGT AGGGCCTTCT ATTGCTAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	SM/J	SWR/J	WSB/EiJ
ss389310336	MGP_WTSI_13_85267024	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	SM/J	SWR/J	WSB/EiJ
rs227687874					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389310336	MGP_WTSI_13_85267024	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85275538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	within coordinates
Gm4076	predicted gene 4076	within coordinates
Rr388812	regulatory region 388812	within coordinates
Rr483357	regulatory region 483357	within coordinates
Tssr4134	transcription start site region 4134	537 bp downstream
Tssr120547	transcription start site region 120547	829 bp downstream
Tssr120548	transcription start site region 120548	717 bp downstream
Tssr120549	transcription start site region 120549	650 bp downstream
Tssr123349	transcription start site region 123349	780 bp upstream
Tssr123350	transcription start site region 123350	409 bp upstream
Tssr123351	transcription start site region 123351	315 bp upstream
Tssr123352	transcription start site region 123352	5 bp upstream