rs227690202 SNP Detail

Summary

• ID
  rs227690202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70109785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCTCAC CCCTTCCCTT
  TTCCCTTCCT AATCAGTGCT TTGGTTTTAC CTTAACAGGT GAACGCTTAT GCTATGAAGA
  AGATAGTTGG TTCAGGTTTC TTAGTCAGCC AAGTGGAAAT TTCAGTGTGA AGTGATGAAA
  ATTTAGAGTT ATGAAAGTAA AAAATGAAGT TACAGAATTG GGTGTCTACT AGGTACTTTA
  Y
  TTCTGGGTTC AAGCCCCCCC CCATTTGTAG ATATATATAT ACCTTTATCT AAGACCTTTA
  GCTATTCACA TCGAAGTGAA TATTTTTCTT TCTTAAGTTC ATCACAAACC CTGTTTTAAA
  TGTTTATATC CCAAGGCTGG TCAATACTGT TCCTTCTTCC TAGACGCTAA GATTTTACTA
  CACTTGATCT TAGCCAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325235736	CHEV_16_70313142	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227690202					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70109785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	939 bp proximal
Gbe1	1,4-alpha-glucan branching enzyme 1	1052 bp upstream
Rr517848	regulatory region 517848	562 bp proximal
Tssr138939	transcription start site region 138939	1070 bp upstream
Tssr138940	transcription start site region 138940	1101 bp upstream
Tssr138941	transcription start site region 138941	1114 bp upstream
Tssr138942	transcription start site region 138942	1160 bp upstream
Tssr138943	transcription start site region 138943	1194 bp upstream
Tssr138944	transcription start site region 138944	1222 bp upstream
Tssr138945	transcription start site region 138945	1580 bp upstream
Tssr138946	transcription start site region 138946	1770 bp upstream