rs227690387 SNP Detail

Summary

• ID
  rs227690387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:104729967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCATAGACG TAAAACTCCA AAATTGAgga
  ctggagagat ggctcagcag ttactggctg aaccacttgc tcttcccaag ttcaagtccc
  agcactcaca tggcagctca caattgtctg taactccagt tccaggggat tggataccgt
  Y
  acatagacat gcatgcagac aaaataccaa tgcacataaa ataaaaacaa aTCATTGAAA
  AATGCTCCAA AAACAAACAA ACAAGCAAAA AAATCCTCCA AGTTGGGAGG AACCACACAG
  ATTTTATCTG TTCCCTCTCC TTCCCTGAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323170385	CHEV_9_104755098	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227690387					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:104729967 () rs orientation: forward

Symbol	Name	Function Class
Cpne4	copine IV	within coordinates
Rr198572	regulatory region 198572	434 bp proximal
Tssr86829	transcription start site region 86829	1689 bp upstream