rs227691127 SNP Detail

Summary

• ID
  rs227691127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:11000514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAAATGT GTTCCTAAAA
  GCCCATGTTC ATGGAGTTCT GTCTTCCTAG GACCAAGCCC ACCCAGAAGA AAAATCCATT
  CTATGAACAA CTGAGATCAA CGAAGAACCA GGTCCTGTCT TCTGTGCATA AGTTAGAGAT
  GGGGATAATT GAGGCCCAAG AGAATATCCA GGAGCTCAAT AAGTGGATAG ACTACTTTAC
  R
  TAAGTACCAG TTAGCAAGTC AACAGTGGAA TGGCACTTTC TGCATTCCTT GGTTTCTGGA
  CTGGAGAGTC TGCAGTTCTG CTTCTACCCA TTCTGCTTTT AGCCATCAGT GTGCCTTGGG
  ATAATAGACT CAGTTTTCAT AAATCCGTAA GACACTGTTA CCCCTCCCAG CATTGTCCAG
  GCATCCTTAA AAGCATCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
ss363988193	MGP_WTSI_5_10950547	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	G	G	G	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
rs227691127					SNP	G	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	G	G	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363988193	MGP_WTSI_5_10950547	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:11000514 () rs orientation: forward

Symbol	Name	Function Class
Speer1k	spermatogenesis associated glutamate (E)-rich protein 1K	within coordinates