rs227696671 SNP Detail

Summary

• ID
  rs227696671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:44882103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGAGGAT TCTGCATCCT
  CAGAGAGGAC GTCAGTGCTA GCATGTGGTT CAAAGGAATC CATTCCTAGT TCTCTCAGGA
  GTTAAAAAAA ATCACAAGGA AAAGCAAATT AGACCTCCTA ACAAAATAAA AGATGGGAAG
  CAAAGCTAAT ACTTGGCCTG GCCTGGAGGG TGGAGGTTGG AAGTCATCAG GAGATAGTTA
  Y
  TCCCACAGCA GGGAAGACTG TCAACCACAA AGGACAATCC ATTTTCCTTT TCAAGGAAAA
  CAACACCAGC ATTATCTAAG CCTTATGGAA ATGAGCAAAT TCCTCCTCTA CCACCCCCTT
  AGGCCTCAAC TAACAATGGT TTTTCACACT TGCCTGGGAC TTGGAGTTGG TAGTCTAGCA
  GGAGACTTCA CAGGCCTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388465217	MGP_WTSI_13_44823996	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227696671					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388465217	MGP_WTSI_13_44823996	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44882103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5525	CpG island 5525	782 bp proximal
Gm60383	predicted gene, 60383	241 bp downstream
Jarid2	jumonji and AT-rich interaction domain containing 2	mRNA-UTR
Rr369688	regulatory region 369688	1980 bp upstream
Rr478586	regulatory region 478586	652 bp proximal
Rr478587	regulatory region 478587	1464 bp proximal
Tssr119535	transcription start site region 119535	895 bp upstream
Tssr119536	transcription start site region 119536	973 bp upstream
Tssr119537	transcription start site region 119537	1012 bp upstream
Tssr119538	transcription start site region 119538	1167 bp upstream
Tssr119539	transcription start site region 119539	1967 bp upstream