rs227696853 SNP Detail

Summary

• ID
  rs227696853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:120753929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGAAGT CAAAATATCA
  CTTTTTGCAG ATGATATGAT AGTTTATATA AGTGACCCTT AAAATTCCAC CAGAGAACTC
  CTAAACCTGA TAAACAGCTT CGGTGAAATA GCTGAATATA AAATTAACTC AAACAAGTCA
  ATGGCTTTTC TCTACACAAA GAATAAACAG GCTGAGAAAG AAATTAGGGA AGCAAAAACC
  Y
  TTCTCAATAG TCACAAATAT TATAAAATAT CTTGGTGTGA CTCTAACTAA TGAAGTAAAA
  GGTCTGTATG ATAAGAACTT CATGTCTCTG AAGATATACA TTAAAGAAGA TCTTAGAAGA
  TGGAAAGATC TGCCATGCTC ATGGATTGGC AGGATCAATA TTATAAAAAT GGCTATCTTG
  CTAAAAGCAA TCTACATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325960941	CHEV_X_118957841	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227696853					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:120753929 () rs orientation: forward

Symbol	Name	Function Class
Rr395603	regulatory region 395603	1781 bp upstream