rs227702286 SNP Detail

Summary

• ID
  rs227702286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:87754112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGGCCGC AGCCCCTCCT
  GCTCTGCTCT CTCGACCGAG CCCACGGCCC CGCACCCCAG ATCCATCCTC CCCCGGCCAA
  GCCCCGCAGC GGTCCCCCGA CTCATCTAAA AGGGAACCCA AGAGGACAGG GGTGGGGGAC
  ACCTGCGACA CAAGTGTCGC GGGGGGCCTC CTGGCTTTTT TTTTTTTTTT TTTTTGGTGC
  Y
  GTCCCTCTGG CGAGGACAGT TCTGAGAGGG GAGGTCCCCT CTTTAGTCAA TCCGCTTCAG
  CATCTTTCCC CGACCCGCGG GGCGCCGGCC GCTCAGCTAC GCACTCACCA TGCTGCAAGG
  GCTACGGGTT TCCGAGACGC GACCAGACAA CCGCTCGACT CGCTCGCTCC ACTCGGACTA
  ATTCTCCTCC TCCGCCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399364116	MGP_WTSI_17_87846024	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227702286					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399364116	MGP_WTSI_17_87846024	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87754112 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	Intron
Cpgi9626	CpG island 9626	within coordinates
Gm65472	predicted gene, 65472	within coordinates
Rr370330	regulatory region 370330	50 bp upstream
Rr370331	regulatory region 370331	374 bp upstream
Rr393074	regulatory region 393074	214 bp downstream
Rr532694	regulatory region 532694	637 bp distal
Rr532695	regulatory region 532695	71 bp distal
Rr532696	regulatory region 532696	within coordinates
Rr532697	regulatory region 532697	162 bp proximal
Tssr146185	transcription start site region 146185	534 bp downstream
Tssr146186	transcription start site region 146186	4 bp downstream
Tssr146187	transcription start site region 146187	541 bp upstream
Tssr149773	transcription start site region 149773	170 bp downstream