rs227705961 SNP Detail

Summary

• ID
  rs227705961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137638186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCCATC CACTGGGGTG
  TTCGCTCCTA CAGGAAGCAT GTGTCCTGGT CCCACCCCTT AGATCTCCTG CCCTGCTCTC
  CCTCCCTGTC CTGCATGTCC TGCATGTCGG TAATGGCTCT GGCTGTTGTC CTGGTTTGTG
  AGGGCAGGGT GGGAAGGCCC GTGGCTTGAT GTTGCTAACT TCTGTGATTT GTCCTTGTCC
  R
  TCTGCCCTGT CCTCCCTCCC CAGGCTGACC TGTGCTCGCC CTCGGATCTC CTCCGGGGCA
  CCGCCCAGGG GCTGCAGACC GTCCTGGAGG CTGTGATCCT GGTTGGGGGC AAGGCCCCTC
  TCCCAGTCCA GCCCTCCTCT GGTCTGGGTG GCTTCCTCCT CTTCTACGTG GTCTTCATGC
  TGCTGCTCTA TGTCGTCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321702657	CHEV_5_138081152	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227705961					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137638186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	1191 bp proximal
Gm20605	predicted gene 20605	within coordinates
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	within coordinates
Rr622927	regulatory region 622927	1215 bp proximal
Rr622928	regulatory region 622928	1307 bp proximal
Rr622929	regulatory region 622929	1518 bp proximal
Rr622930	regulatory region 622930	1647 bp proximal
Sap25	sin3 associated polypeptide	1549 bp upstream
Tssr49363	transcription start site region 49363	1417 bp downstream
Tssr49364	transcription start site region 49364	1352 bp upstream