rs227714053 SNP Detail

Summary

• ID
  rs227714053
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:61676059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAATTATT TATTGTCTTC TGCCTAGGAA
  GCTCCCAGGG CATGAAATAT TGATTTAGGT GTTTGCTAGG CATGGATGAC TGTGTTGCTC
  TTCTTAATAT ATGATGAATT GTTTCTATGT GTGCCATTAT GAGGCTGAAA AGCAAATTAA
  M
  CAGGGTTATT TAATAAACAT GAAATATAAA CACTAAGCCC TATGCCCAGT TACTAGTGAG
  GGGTCATGAA AGTGCACAGG GTGTACTGCT CAAACGCTGG TGTAGCTGCA GGCTTCCGTT
  ATCTACTGCA GACATGGATT TTGCTGCATT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319741940	CHEV_1_61683474	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227714053					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:61676059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi308	CpG island 308	1705 bp proximal
Pard3b	par-3 family cell polarity regulator beta	1924 bp upstream
Rr29520	regulatory region 29520	1341 bp proximal
Tssr6971	transcription start site region 6971	1919 bp upstream
Tssr6972	transcription start site region 6972	1969 bp upstream