rs227715805 SNP Detail

Summary

• ID
  rs227715805
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37654019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCAGAC ACTTTTCATA
  GCTCCCAGAT CCTGAAGCCC CCGGGTCCGC CGGACTTGAG GTGGGGGGGT TGGGGGAGGG
  AACACGGGGG GTAAAAGAGG TGGATAGGGA GGGCGGGGCG GACCTTGGCG ACACCTTCGG
  CGCTCTTGAT TGGAGGTTTC CGAACCTGCG GAGGGCGGGC AGATAGGGTT GGTTGGGGGG
  S
  GGGGGGGCGG GAGAAGAAGC GGGAAGCCTC CGGTGAGGCA GAGTAGGTGG TGCAGGCTAG
  GGGCGGGGTA AACTATCTGG GGAAAAGAAG AGGGTGGGAA GAAAAGTAAG GCGAAGGGAA
  ACTTTACCAA GATGAAGGAC TAAGGAGTTG CAAGGCCACG GGAAGAAGCT GAAGTAAGAG
  GAAACTTAAG CATGCCCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss403285876	MGP_WTSI_X_35918319	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs227715805					SNP	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403285876	MGP_WTSI_X_35918319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37654019 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22681	CpG island 22681	54 bp distal
Cul4b	cullin 4B	within coordinates
Gm61874	predicted gene, 61874	within coordinates
Rr394940	regulatory region 394940	1067 bp upstream
Rr690807	regulatory region 690807	409 bp distal
Tssr163211	transcription start site region 163211	1056 bp upstream
Tssr163212	transcription start site region 163212	997 bp upstream
Tssr163213	transcription start site region 163213	979 bp upstream
Tssr163214	transcription start site region 163214	935 bp upstream
Tssr163215	transcription start site region 163215	808 bp upstream
Tssr163216	transcription start site region 163216	783 bp upstream
Tssr163217	transcription start site region 163217	587 bp upstream
Tssr163218	transcription start site region 163218	471 bp upstream
Tssr163219	transcription start site region 163219	247 bp upstream
Tssr163220	transcription start site region 163220	208 bp upstream
Tssr163221	transcription start site region 163221	180 bp upstream
Tssr163222	transcription start site region 163222	118 bp upstream
Tssr163223	transcription start site region 163223	95 bp upstream
Tssr163224	transcription start site region 163224	1446 bp downstream