rs227732748 SNP Detail

Summary

• ID
  rs227732748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52292171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTTCCA CTACTTTATC
  TACTCTCAGA AGAGCTATGG CTATCAGACC AAGAGGGAGA GAAGTGTGTA GGGCGTGCCT
  CAGCCTTAGC TGACACTTGT AAATGTCTCT TTTATTTCCT CAGAGGAAGG GATGAGATGA
  GAGCTGTACC CAGGTTATAT GGATACATGG CTTGGAATGA ACCCAGAGTG TTTCCTTCTC
  Y
  GTTCTAAATA TCCCTAGATC TATGCCTGGA ACCTTCTAGC CTCCATACAA TCTAATCTTC
  TGAGCTGACT GATTCAATCT GGCTTCTTAC TGAATTGCTC TGACTGGCTT CATACTAACT
  TTGGCAATAT GTTCTAATAT GTTCTGACTC TCATTCTCTG ACTCATTCTG TCTTCACTTG
  TATCTAGTTT GTTCCCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323303509	CHEV_10_52135881	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227732748					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52292171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1536	CpG island 1536	1055 bp proximal
Nus1	NUS1 dehydrodolichyl diphosphate synthase subunit	1472 bp upstream
Rr224795	regulatory region 224795	629 bp proximal
Rr401887	regulatory region 401887	1249 bp upstream
Tssr93302	transcription start site region 93302	1457 bp upstream
Tssr93303	transcription start site region 93303	1514 bp upstream
Tssr93304	transcription start site region 93304	1626 bp upstream
Tssr93305	transcription start site region 93305	1796 bp upstream
Tssr93306	transcription start site region 93306	1956 bp upstream