rs227741092 SNP Detail

Summary

• ID
  rs227741092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79405924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAAATGT ATCCCAAACA
  CAGCACTCAG ACTTCATGTT TTAATACAGT TTGGTAGCTG TGTGTTTAAT CTCTATAAAT
  GAAAATATTT ACTTAATATT TGAAGTATTA AAACTTTGAC CATTTAAAAA TTTCCATTTT
  TATTATACCC CAAATTTTGA GGTGGAAAAA ATAGAATTTT ATTTATTTAA GATATGTTTA
  Y
  ATACAGCTTT TCGGGGGAAA TCTATTGGGT AATAATAAGT ATATGTAGAT CATATGTTTC
  CAAAGTGATT AAGTTATTGA AATATCTATC ATTAACATAT ATAAAAGGCA CTCTGATTTA
  AAAATTACTT CTGTAGCTGG TAAGCATACC ACTGTAATAA TCTACCCGTG TACGTGGGCT
  TCAGTCAGGG GTCAGGTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323760116	CHEV_11_79328600	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227741092					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79405924 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm166	DNA segment, Chr 11, Boehm 166	177 bp distal
D11Bhm167	DNA segment, Chr 11, Boehm 167	367 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	471 bp downstream
Tssr109487	transcription start site region 109487	669 bp downstream
Tssr109488	transcription start site region 109488	867 bp downstream
Tssr109489	transcription start site region 109489	1173 bp downstream
Tssr109490	transcription start site region 109490	1220 bp downstream
Tssr109491	transcription start site region 109491	1253 bp downstream
Tssr109492	transcription start site region 109492	1280 bp downstream
Tssr109493	transcription start site region 109493	1319 bp downstream
Tssr109494	transcription start site region 109494	1334 bp downstream
Tssr109495	transcription start site region 109495	1374 bp downstream
Tssr109496	transcription start site region 109496	1387 bp downstream
Tssr109497	transcription start site region 109497	1426 bp downstream
Tssr109498	transcription start site region 109498	1487 bp downstream
Tssr109499	transcription start site region 109499	1524 bp downstream
Tssr109500	transcription start site region 109500	1555 bp downstream
Tssr109501	transcription start site region 109501	1595 bp downstream
Tssr109502	transcription start site region 109502	1621 bp downstream
Tssr109503	transcription start site region 109503	1696 bp downstream