rs227741473 SNP Detail

Summary

• ID
  rs227741473
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30208912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCGTGTG TTCCCTAGCT
  CACTTGTGTT GGAGTACGTA AGTAGTCTAG GATTGAGGAA GTCTGGGTAG AACTGAAAAA
  ACCCTGCACA CACTCCTGAC AGCTTCCTTA GCAGTTGGTT ATTTACCTCG CAGATTTTAA
  CAAGCACAAG CCTCTCCTGG TCCTATAAAT AAAACTGTCA AGCCAACCAT CCACTTAGAG
  W
  GCCCTCTTCA ATTAGCCATC AAGTGTTTCT GACCCTCTTA TGCACACCTC TTAAACAGTG
  GGTCTCCCCC TGGCCTGCCT GTACTTCCTC ATTCCTCAAC TCGTGGCAAA CTAACCACAC
  ACACACACAC ACACACACAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGCTCAACTG
  ACAGTAACCC TTGACCTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395814154	MGP_WTSI_16_30390180	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227741473					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395814154	MGP_WTSI_16_30390180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30208912 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	1238 bp upstream
Cpgi8159	CpG island 8159	567 bp distal
Gm61087	predicted gene, 61087	8 bp downstream
Gm61089	predicted gene, 61089	386 bp upstream
Rr370076	regulatory region 370076	564 bp downstream
Rr514223	regulatory region 514223	1575 bp distal
Rr514224	regulatory region 514224	1205 bp distal
Rr514225	regulatory region 514225	1196 bp distal
Rr514226	regulatory region 514226	397 bp distal
Rr514227	regulatory region 514227	within coordinates
Tssr140714	transcription start site region 140714	1393 bp upstream
Tssr140715	transcription start site region 140715	1292 bp upstream
Tssr140716	transcription start site region 140716	1236 bp upstream
Tssr140717	transcription start site region 140717	746 bp upstream