rs227743259 SNP Detail

Summary

• ID
  rs227743259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137888273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTTTGATT TATTCTAATA TGTGTATGCT
  TTTCAATTTT CAAAGATCAA TTCATGTTGT TAAAATTACT TTGAATTGTA GTTAACATAT
  CTGTCCTTTC CCAGTCAAGG GAGGAGTCAA CTGTTACACA GTCTTGGATC AAGGGCAGGA
  Y
  ACTTATTTTT GTTTTGTTTT GTTTCATTTT CAtttttatt ggttatttta tttattgaca
  tttaaaatgt tacccccttc ccagtttccc ctaaaaaaaa aaaccctcct gtcccctccc
  cccacctcta tgagggtgct ccctatccca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319999618	CHEV_1_139857112	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227743259					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137888273 () rs orientation: forward

Symbol	Name	Function Class
C530045E16Rik	RIKEN cDNA C530045E16 gene	within coordinates
Gm4258	predicted gene 4258	within coordinates
Gm26936	predicted gene, 26936	within coordinates
Gm41959	predicted gene, 41959	within coordinates
Mir181a-1hg	Mir181a-1 and Mir181b-1 host gene	within coordinates
Tssr9129	transcription start site region 9129	32 bp downstream
Tssr9130	transcription start site region 9130	935 bp upstream