rs227744150 SNP Detail

Summary

• ID
  rs227744150
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:28814133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCTCCCG CCGACTCGCT
  CACTGCGGCG GCGGCGGCGG CGGCGGCGGC AGCGGCGCGG GCCTGCGGTG GGCGCTCGGC
  TGCCGCTCGA AACAATGCGG CCGCGAGGGG AGGCAGCGCG CGGGGCTCGG GCTCGACCCG
  CCGCCGGGAG GACTGGCCGC AGCCGGCAGT TTGCACGGAG AGGCCACCGA GTGAGAAGTC
  W
  CCCGTCACTT GGCCCAGGTC CGGTACTCCG GGAGTCCAAG TAGCCAGTCC TGGCCTCTGG
  GGACGAGTTC TGGTACGCGA GGGGAGGCTT CTTTTGACCA CAGGATACGC CTGTACGTGG
  GTATTTTTCC CTGCGTCTCC TTTGAACCAT TGGCAAAAGG TAAAATACCT TTTGGTGCCT
  GTAGTTGGAG CTGGGGAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361010175	MGP_WTSI_4_28741283	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227744150					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361010175	MGP_WTSI_4_28741283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:28814133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14096	CpG island 14096	within coordinates
Epha7	Eph receptor A7	within coordinates
Gm11915	predicted gene 11915	164 bp downstream
Gm69693	predicted gene, 69693	1260 bp upstream
Rr100780	regulatory region 100780	within coordinates
Tssr1129	transcription start site region 1129	1054 bp downstream
Tssr1130	transcription start site region 1130	1450 bp upstream
Tssr36648	transcription start site region 36648	1312 bp downstream
Tssr36649	transcription start site region 36649	997 bp downstream
Tssr36650	transcription start site region 36650	960 bp downstream