rs227750444 SNP Detail

Summary

• ID
  rs227750444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34420180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGGGGGT CGGCACCGGG GTCACGAGGC CGCGGGGACC
  GCGGGCGGAA GGTCGGGCCG CCCCTTCTTT CTCCAACCCC GTGGACCTAG GCGTCTGGGC
  R
  GGCCAGCGGC GGTGGGCTTG GAGAGGGGGC TCAGAGCCGA GGACAAGCCT TTCGGGGTAG
  GGGTGGGGGG CACATGGACT GGAGCGCGCT ACTTTTGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322573973	CHEV_8_35040624	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227750444					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34420180 () rs orientation: forward

Symbol	Name	Function Class
9530006C21Rik	RIKEN cDNA 9530006C21 gene	1383 bp upstream
Cpgi20240	CpG island 20240	within coordinates
Gm64370	predicted gene, 64370	1189 bp upstream
Rbpms	RNA binding protein gene with multiple splicing	289 bp upstream
Rr661902	regulatory region 661902	358 bp distal
Rr661903	regulatory region 661903	within coordinates
Rr661904	regulatory region 661904	699 bp proximal
Rr661905	regulatory region 661905	1598 bp proximal
Rr661906	regulatory region 661906	1676 bp proximal
Tssr80881	transcription start site region 80881	336 bp upstream
Tssr80882	transcription start site region 80882	175 bp upstream
Tssr80883	transcription start site region 80883	143 bp upstream