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rs227750444 SNP Detail
Summary
  • ID
    rs227750444
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr8:34420180 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GAGGGGGGGT CGGCACCGGG GTCACGAGGC CGCGGGGACC
    GCGGGCGGAA GGTCGGGCCG CCCCTTCTTT CTCCAACCCC GTGGACCTAG GCGTCTGGGC
    R
    GGCCAGCGGC GGTGGGCTTG GAGAGGGGGC TCAGAGCCGA GGACAAGCCT TTCGGGGTAG
    GGGTGGGGGG CACATGGACT GGAGCGCGCT ACTTTTGTT                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss322573973 CHEV_8_35040624 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs227750444 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:34420180 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
9530006C21Rik RIKEN cDNA 9530006C21 gene 1383 bp upstream
Cpgi20240 CpG island 20240 within coordinates
Gm64370 predicted gene, 64370 1189 bp upstream
Rbpms RNA binding protein gene with multiple splicing 289 bp upstream
Rr661902 regulatory region 661902 358 bp distal
Rr661903 regulatory region 661903 within coordinates
Rr661904 regulatory region 661904 699 bp proximal
Rr661905 regulatory region 661905 1598 bp proximal
Rr661906 regulatory region 661906 1676 bp proximal
Tssr80881 transcription start site region 80881 336 bp upstream
Tssr80882 transcription start site region 80882 175 bp upstream
Tssr80883 transcription start site region 80883 143 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory