rs227754587 SNP Detail

Summary

• ID
  rs227754587
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76134120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTGTCC CGGCTCCCCT
  GGCATAGAGT ACCCGTGTCC CCTCCCCACC CTGCCTTCTG AGGGGCACGC AGGGCGGGGT
  CTCATTCTTG CGCTGGGCCC CAAGAGCAGA GAGGATGTCA TGTTTCAAGG GAGGAGGCTC
  TCTCGTGCTG CCATTGTTAA AATGCCAATA AAAGGGTACC TTCTGCTTTC TGCTTCTCCT
  W
  GTCTCTCTTC ACTGCCACTT CCTCCAGGAG GCATGGAGGG GCTTCAGCAC CCCCTGCCCT
  GGCTGATGGT TAGTTCTGGA CAGGCACTGA CGACAGCGGT TAATGACAGT TAGCTAATCC
  AGTGTGTGCG CTGCTTCTTT TCTTGCTGTC TTTCTGGCTG CATTTTAAGG TGTGCACCGA
  GATCTGAACT GATGAACAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394611532	MGP_WTSI_15_76080350	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	A	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227754587					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	A	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611532	MGP_WTSI_15_76080350	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76134120 () rs orientation: forward

Symbol	Name	Function Class
Grina	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	16 bp downstream
Mir6953	microRNA 6953	1662 bp downstream
Tssr131731	transcription start site region 131731	1997 bp downstream
Tssr131732	transcription start site region 131732	1967 bp downstream
Tssr131733	transcription start site region 131733	1931 bp downstream
Tssr131734	transcription start site region 131734	1902 bp downstream
Tssr131735	transcription start site region 131735	1848 bp downstream
Tssr131736	transcription start site region 131736	1778 bp downstream
Tssr131737	transcription start site region 131737	1622 bp downstream
Tssr131738	transcription start site region 131738	1448 bp downstream
Tssr131739	transcription start site region 131739	1422 bp downstream
Tssr131740	transcription start site region 131740	1357 bp downstream
Tssr131741	transcription start site region 131741	1296 bp downstream
Tssr131742	transcription start site region 131742	1108 bp downstream
Tssr131743	transcription start site region 131743	1078 bp downstream
Tssr131744	transcription start site region 131744	1059 bp downstream
Tssr131745	transcription start site region 131745	932 bp downstream
Tssr131746	transcription start site region 131746	878 bp downstream
Tssr131747	transcription start site region 131747	830 bp downstream
Tssr131748	transcription start site region 131748	654 bp downstream
Tssr131749	transcription start site region 131749	578 bp downstream
Tssr131750	transcription start site region 131750	431 bp downstream
Tssr131751	transcription start site region 131751	360 bp downstream
Tssr134961	transcription start site region 134961	1872 bp upstream
Tssr134962	transcription start site region 134962	1747 bp upstream
Tssr134963	transcription start site region 134963	570 bp upstream
Tssr134964	transcription start site region 134964	539 bp upstream
Tssr134965	transcription start site region 134965	514 bp upstream
Tssr134966	transcription start site region 134966	381 bp upstream
Tssr134967	transcription start site region 134967	6 bp upstream