rs227760706 SNP Detail

Summary

• ID
  rs227760706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126395736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGACTC CTGATCTGCG
  TCTTATATGA GAGACCAGGG TTGGGAATCT TCGAGACACC CTGGAAGTTG TGGAGCTTCT
  GAACTTGGAT CTGAGATGTA AAATCGTAAA ATGGGCTGGT GCTAAATTCC TCTGTGCGTA
  GCTTGTGCAC TACAGATCTC CAGTGGCAGA CACTACTTTC ACTCACCGCT CCTCCCAGAC
  R
  TATGTACCAA TGCCATTTGC CTACTAACTG AACCAATCAC TTCTTCCGCT CTCATGGCGG
  TGGTACTGGA GATTGTATGC AGTGAACAAG CACTCTTCCA CTGAGCTGCA CCTCCAGCCC
  TGACCCATCA TTTTCAATAC CTTAGGATAG TACATGATCC CTCTCCCCCG GCCCCTCATA
  TTATATAGTA AAGACCCGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322860934	CHEV_8_128192897	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227760706					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126395736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	356 bp proximal
Gm30871	predicted gene, 30871	1874 bp upstream
Gm63868	predicted gene, 63868	within coordinates
Map10	microtubule-associated protein 10	821 bp upstream
Rr175263	regulatory region 175263	265 bp proximal
Rr186277	regulatory region 186277	464 bp proximal
Rr188607	regulatory region 188607	1311 bp distal
Tssr80077	transcription start site region 80077	831 bp upstream
Tssr83475	transcription start site region 83475	740 bp downstream