rs227766620 SNP Detail

Summary

• ID
  rs227766620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141935257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTGCCT ACCATCAGCC
  TGTCCCACAA AGCTGTGGCT GCAGATAGAA CCAGAGCAGG AAGTGGAAAG AGCTGCTGCT
  GAGAACATGT CGGAAGACGG TAACACAGGC GGCTAACATC CTGTGCACTG AGGGGCCCCT
  GAGAAGTACC ACAAGGAACC CTCCACAGAC AGGGAAAGGG CAGAGCCAGG TACAGGGTAC
  Y
  ACACCACCCA GACAAAGGCC AGGTAAGCAG GATGCTAGCT GGACTCCTAG CCAGGTGACA
  GGATTTGCAG CTTCCTGCCC CATCCTGGCA GGATTGATCT CTGGTCCCTG CAACCCTGCT
  GTCCTGATGC AAACCCAGGA GTGAATGGCC TCTCCTTTAA AGAAGGCTAA AACGATAAGA
  TCTTCCTACA GACAAAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373449989	MGP_WTSI_7_149567425	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227766620					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373449989	MGP_WTSI_7_149567425	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141935257 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	within coordinates
Rr658151	regulatory region 658151	within coordinates
Tssr70137	transcription start site region 70137	722 bp downstream
Tssr70138	transcription start site region 70138	674 bp downstream
Tssr70139	transcription start site region 70139	655 bp downstream
Tssr70140	transcription start site region 70140	628 bp downstream
Tssr70141	transcription start site region 70141	607 bp downstream
Tssr70142	transcription start site region 70142	560 bp downstream
Tssr70143	transcription start site region 70143	1104 bp upstream
Tssr70144	transcription start site region 70144	1906 bp upstream
Tssr75774	transcription start site region 75774	711 bp upstream
Tssr75775	transcription start site region 75775	706 bp upstream
Tssr75776	transcription start site region 75776	685 bp upstream
Tssr75777	transcription start site region 75777	634 bp upstream
Tssr75778	transcription start site region 75778	621 bp upstream
Tssr75779	transcription start site region 75779	586 bp upstream
Tssr75780	transcription start site region 75780	570 bp upstream
Tssr75781	transcription start site region 75781	552 bp upstream
Tssr75782	transcription start site region 75782	524 bp upstream
Tssr75783	transcription start site region 75783	1096 bp downstream
Tssr75784	transcription start site region 75784	1929 bp downstream
Tssr75785	transcription start site region 75785	1949 bp downstream
Tssr75786	transcription start site region 75786	1979 bp downstream