rs227767246 SNP Detail

Summary

• ID
  rs227767246
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3124396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAATAATTT CAGCTCATTC AAGAGACTCA GGAAGGAGAT
  CACAAGATTG AAGCCAGCCT GAGCAACTTA CCAAGACCCT GTGTCAACAT AAAAAAGAGG
  A
  AGGGTGCTTG GGGAGCTGCT CGGTCAGCAA GCTACTTGCA GCACAAGCGT AAAGACCTGA
  GTTTGACCCC TCAGAACCTC ATGAGAAACT GGGTGTGGC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546769	CHEV_11_3074399	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227767246					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3124396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	1815 bp distal
Cpgi2458	CpG island 2458	590 bp distal
Rr441481	regulatory region 441481	1946 bp distal
Rr441484	regulatory region 441484	1446 bp distal
Rr441485	regulatory region 441485	572 bp distal
Rr441486	regulatory region 441486	within coordinates
Rr441487	regulatory region 441487	782 bp proximal
Rr441488	regulatory region 441488	1213 bp proximal
Rr441489	regulatory region 441489	1283 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	1599 bp upstream
Tssr106449	transcription start site region 106449	1067 bp upstream