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rs227771925 SNP Detail
Summary
  • ID
    rs227771925
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94842510 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACTTGGGGC AAGACAGTCA
TCGAATACAA AACCACCAAG ACCTCCCGCC TGCCCATCAT CGATGTGGCT CCCTTGGACA
TTGGTGCCCC AGACCAGGAA TTCGGACTAG ACATTGGCCC TGCCTGCTTC GTGTAAACTC
CCTCCACCCC AATCTGGTTC CCTCCCACCC AGCCCACTTT TCCCCAACCC TGGAAACAGA
Y
GAACAACCCA AACTCAATTT CCCCCAAAAG CCAAAAATAT GGGAGATAAT TTCACATGGA
CTTTGGAAAA CATTTTTTTT CCTTTGCATT CACCTTTCAA ACTTAGTTTT TACCTTTGAC
CAACTGAACG TGACCAAAAA CCAAAAGTGC ATTCAACCTT ACCAAAAAAG AAAAAAAAAA
AAAGAATAAA TAAATAACTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336273 MGP_WTSI_11_94812998 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227771925 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336273 MGP_WTSI_11_94812998 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94842510 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 1634 bp proximal
Tssr3647 transcription start site region 3647 297 bp upstream
Tssr104262 transcription start site region 104262 1510 bp downstream
Tssr104263 transcription start site region 104263 1377 bp downstream
Tssr104264 transcription start site region 104264 1355 bp downstream
Tssr104265 transcription start site region 104265 1329 bp downstream
Tssr104266 transcription start site region 104266 1317 bp downstream
Tssr104267 transcription start site region 104267 1250 bp downstream
Tssr104268 transcription start site region 104268 1222 bp downstream
Tssr104269 transcription start site region 104269 1209 bp downstream
Tssr104270 transcription start site region 104270 1188 bp downstream
Tssr104271 transcription start site region 104271 1134 bp downstream
Tssr104272 transcription start site region 104272 940 bp downstream
Tssr104273 transcription start site region 104273 846 bp downstream
Tssr104274 transcription start site region 104274 828 bp downstream
Tssr104275 transcription start site region 104275 819 bp downstream
Tssr104276 transcription start site region 104276 808 bp downstream
Tssr104277 transcription start site region 104277 534 bp downstream
Tssr104278 transcription start site region 104278 513 bp downstream
Tssr104279 transcription start site region 104279 456 bp downstream
Tssr104280 transcription start site region 104280 444 bp downstream
Tssr104281 transcription start site region 104281 430 bp downstream
Tssr104282 transcription start site region 104282 360 bp downstream
Tssr104283 transcription start site region 104283 207 bp downstream
Tssr104284 transcription start site region 104284 147 bp downstream
Tssr104285 transcription start site region 104285 117 bp downstream
Tssr104286 transcription start site region 104286 84 bp downstream
Tssr104287 transcription start site region 104287 60 bp downstream
Tssr104288 transcription start site region 104288 20 bp downstream
Tssr104289 transcription start site region 104289 12 bp downstream
Tssr104290 transcription start site region 104290 29 bp upstream
Tssr104291 transcription start site region 104291 38 bp upstream
Tssr104292 transcription start site region 104292 76 bp upstream
Tssr104293 transcription start site region 104293 224 bp upstream
Tssr104294 transcription start site region 104294 261 bp upstream
Tssr104295 transcription start site region 104295 319 bp upstream
Tssr104296 transcription start site region 104296 338 bp upstream
Tssr104297 transcription start site region 104297 371 bp upstream
Tssr104298 transcription start site region 104298 409 bp upstream
Tssr104299 transcription start site region 104299 437 bp upstream
Tssr104300 transcription start site region 104300 457 bp upstream
Tssr104301 transcription start site region 104301 581 bp upstream
Tssr104302 transcription start site region 104302 593 bp upstream
Tssr104303 transcription start site region 104303 607 bp upstream
Tssr104304 transcription start site region 104304 646 bp upstream
Tssr104305 transcription start site region 104305 671 bp upstream
Tssr104306 transcription start site region 104306 686 bp upstream
Tssr104307 transcription start site region 104307 702 bp upstream
Tssr104308 transcription start site region 104308 772 bp upstream
Tssr104309 transcription start site region 104309 792 bp upstream
Tssr104310 transcription start site region 104310 837 bp upstream
Tssr104311 transcription start site region 104311 933 bp upstream
Tssr104312 transcription start site region 104312 1003 bp upstream
Tssr104313 transcription start site region 104313 1019 bp upstream
Tssr104314 transcription start site region 104314 1435 bp upstream
Tssr110222 transcription start site region 110222 786 bp upstream
Tssr110223 transcription start site region 110223 427 bp upstream
Tssr110224 transcription start site region 110224 363 bp upstream
Tssr110225 transcription start site region 110225 147 bp upstream
Tssr110226 transcription start site region 110226 107 bp upstream
Tssr110227 transcription start site region 110227 94 bp upstream
Tssr110228 transcription start site region 110228 34 bp upstream
Tssr110229 transcription start site region 110229 14 bp upstream
Tssr110230 transcription start site region 110230 within coordinates
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory