rs227772443 SNP Detail

Summary

• ID
  rs227772443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:70110992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC TGCCGCTCGC ACTCCACTCG
  R
  CCCACTCGAC CCTCTCGGGC CTCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325235756	CHEV_16_70314349	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227772443					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70110992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	within coordinates
Gbe1	1,4-alpha-glucan branching enzyme 1	mRNA-UTR
Rr517848	regulatory region 517848	30 bp distal
Rr517849	regulatory region 517849	1766 bp proximal
Tssr138939	transcription start site region 138939	128 bp downstream
Tssr138940	transcription start site region 138940	101 bp downstream
Tssr138941	transcription start site region 138941	88 bp downstream
Tssr138942	transcription start site region 138942	33 bp downstream
Tssr138943	transcription start site region 138943	8 bp downstream
Tssr138944	transcription start site region 138944	15 bp upstream
Tssr138945	transcription start site region 138945	373 bp upstream
Tssr138946	transcription start site region 138946	563 bp upstream
Tssr138947	transcription start site region 138947	1644 bp upstream