rs227773564 SNP Detail

Summary

• ID
  rs227773564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT GAGAAGTTAT GAGCAGCACC
  R
  CCACTTAGAG CCTGCAGAGA ACTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319993375	CHEV_1_137685144	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227773564					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716305 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	274 bp distal
Rr419277	regulatory region 419277	567 bp distal
Rr419278	regulatory region 419278	61 bp proximal
Rr419279	regulatory region 419279	380 bp proximal
Rr419280	regulatory region 419280	1167 bp proximal
Rr419281	regulatory region 419281	1438 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron