rs227773567 SNP Detail

Summary

• ID
  rs227773567
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:59250335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTGGACT TTATCACTAA
  ATGGGCTTAT TATTGTAAAC ATATCTTCAT AGCTTCTCAT TTCCCAATGA AAAGCAGGAT
  CCCTGTCATT AGAGATCATA ATAATGTTAT CGGGACAATT AAAGTTTGTA AATTTAACTC
  TCTTGTTTGA CCAAGAGCCT TTTACACTTT TATATACATT TTAAAAATAT TTTTATAAAT
  R
  TAAAAATAGT ACATGTGCAA TTTAGAAAAC TTTGCACCAG TAAATAGATA AAAATTATAT
  ATATTTTTCA CATTGCATTT ATGAATGTAC TTCTTTATAT GATCAATTTT TGTAACATTG
  TATTATTTAA TATGTGTTTT ATTTATTTGG CTTAACCTTC CAAAATACTT TTACAGCTGT
  AATAACCCAC TAGAAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358117587	MGP_WTSI_3_59146836	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227773567					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358117587	MGP_WTSI_3_59146836	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59250335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13208	CpG island 13208			1385 bp proximal
Gm38186	predicted gene, 38186			1176 bp upstream
Igsf10	immunoglobulin superfamily, member 10			Intron
				mRNA-UTR
Rr577347	regulatory region 577347			972 bp distal
Rr577348	regulatory region 577348			117 bp proximal
Rr577349	regulatory region 577349			1235 bp proximal
Rr577350	regulatory region 577350			1355 bp proximal
Rr577351	regulatory region 577351			1470 bp proximal
Tssr33412	transcription start site region 33412			1067 bp downstream
Tssr33413	transcription start site region 33413			1099 bp downstream
Tssr33414	transcription start site region 33414			1137 bp downstream
Tssr33415	transcription start site region 33415			1164 bp downstream
Tssr33416	transcription start site region 33416			1238 bp downstream
Tssr33417	transcription start site region 33417			1432 bp downstream
Tssr33418	transcription start site region 33418			1456 bp downstream
Tssr33419	transcription start site region 33419			1524 bp downstream