rs227781875 SNP Detail

Summary

• ID
  rs227781875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:113657891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCACCG CCCTAACCCT
  GTTAGGAGCT TCTGGGTTCA CTCAATCACT TTTCAACACC CCCGCCGCCA CCCTGGGATA
  CGGCACCAGA GCCAGACCCT TGGTTGCCTG GAAAGAACGG GAGCTGATTC GGAATAACAA
  GCTGTGTGTC TTCTCAGCCC TGTGGTGTGT GCGGCAGAGG TGGGTGAGCT GAGAACATCT
  R
  GAACACCCAT CCACACCCCT TGTCATTTTA CACTTGGGGA AACTGAGGCC AGGAGGAAAG
  GACATTCATC CAAGGTGCAA AGCTACTTGG GATTAAAAGC CAGATGTAGC CTGCCCCCGC
  CCCCGTCCTT CCCAAGACAC CTTGTACACT GTAGAGCTAC CAAAACATGA AGCACACCCA
  CATGAGGCTC CGTGGGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321649793	CHEV_5_113939045	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227781875					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:113657891 () rs orientation: forward

Symbol	Name	Function Class
Tssr48022	transcription start site region 48022	814 bp upstream
Tssr48023	transcription start site region 48023	874 bp upstream
Wscd2	WSC domain containing 2	within coordinates